STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcb4cDNA clone:J023093F02, full insert sequence; Belongs to the glycosyl hydrolase 18 family. (307 aa)    
Predicted Functional Partners:
Q6Z7I5_ORYSJ
Os02g0329300 protein.
     
 0.735
RGB1
Guanine nucleotide-binding protein subunit beta; Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
    
 0.696
PSB28
Photosystem II reaction center PSB28 protein, chloroplastic; Belongs to the Psb28 family.
     
 0.693
Q0DJD8_ORYSJ
Signal peptidase I.
   
 
 0.687
Q5VN14_ORYSJ
Signal peptidase I.
   
 
 0.687
A0A0P0VT29
Os03g0147900 protein.
     
 0.574
Q0IRL1_ORYSJ
Signal peptidase I family protein, expressed.
     
 0.574
Q67UZ3_ORYSJ
Os09g0453400 protein.
     
 0.574
Q6ERV1_ORYSJ
cDNA clone:J013100B19, full insert sequence.
     
 0.574
Q7XS59_ORYSJ
cDNA clone:001-103-F08, full insert sequence.
     
 0.574
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.