STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps11SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (133 aa)    
Predicted Functional Partners:
rpl13e
KEGG: ape:APES024 50S ribosomal protein L13e; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 
 0.999
Smar_0290
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: pho:PH0378 UDP-glucose 4-epimerase.
   
 0.999
rpl35ae
KEGG: ape:APE2324 50S ribosomal protein L35Ae; Belongs to the eukaryotic ribosomal protein eL33 family.
   
 
 0.999
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
 
 
 0.999
rpl44e
LSU ribosomal protein L44E; Binds to the 23S rRNA.
   
 
 0.999
rpl10e
TIGRFAM: ribosomal protein L10.e; PFAM: Ribosomal protein L10E; KEGG: ape:APE0449 50S ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.
  
 
 0.999
rpl40e
PFAM: Ribosomal protein L40e; KEGG: ape:APES002 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.999
Smar_0724
SMART: Nucleotide binding protein, PINc; KEGG: sto:ST2137 hypothetical protein.
   
 0.999
rpl21e
PFAM: ribosomal protein L21e; KEGG: sto:ST0459 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
 
 
 0.999
rpl30e
PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: pho:PHS043 50S ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 
 0.999
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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