Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Smar_0203 | ribK | Smar_0203 | Smar_1200 | TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; Protein of unknown function DUF357; KEGG: sto:ST1279 hypothetical protein. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.937 |
| Smar_0488 | ribK | Smar_0488 | Smar_1200 | TIGRFAM: riboflavin synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: sto:ST0393 riboflavin synthase beta chain. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.934 |
| Smar_0541 | Smar_0913 | Smar_0541 | Smar_0913 | PFAM: TrkA-C domain protein; PhoU family protein; KEGG: mac:MA1435 potassium channel protein. | PFAM: PUA domain containing protein; KEGG: mhu:Mhun_2275 uncharacterized domain 2. | 0.488 |
| Smar_0541 | ribK | Smar_0541 | Smar_1200 | PFAM: TrkA-C domain protein; PhoU family protein; KEGG: mac:MA1435 potassium channel protein. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.518 |
| Smar_0721 | ribK | Smar_0721 | Smar_1200 | PFAM: Protein of unknown function DUF371; KEGG: pab:PAB0623 hypothetical protein. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.476 |
| Smar_0913 | Smar_0541 | Smar_0913 | Smar_0541 | PFAM: PUA domain containing protein; KEGG: mhu:Mhun_2275 uncharacterized domain 2. | PFAM: TrkA-C domain protein; PhoU family protein; KEGG: mac:MA1435 potassium channel protein. | 0.488 |
| Smar_0913 | dnaG | Smar_0913 | Smar_0889 | PFAM: PUA domain containing protein; KEGG: mhu:Mhun_2275 uncharacterized domain 2. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | 0.413 |
| Smar_0913 | nac | Smar_0913 | Smar_0871 | PFAM: PUA domain containing protein; KEGG: mhu:Mhun_2275 uncharacterized domain 2. | Nascent polypeptide associated complex NAC; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | 0.482 |
| Smar_0913 | ribK | Smar_0913 | Smar_1200 | PFAM: PUA domain containing protein; KEGG: mhu:Mhun_2275 uncharacterized domain 2. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.536 |
| Smar_1199 | Smar_1201 | Smar_1199 | Smar_1201 | PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: pho:PH1274 formaldehyde:ferredoxin oxidoreductase. | SMART: AAA ATPase; KEGG: afu:AF0452 hypothetical protein. | 0.456 |
| Smar_1199 | ribK | Smar_1199 | Smar_1200 | PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: pho:PH1274 formaldehyde:ferredoxin oxidoreductase. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.884 |
| Smar_1201 | Smar_1199 | Smar_1201 | Smar_1199 | SMART: AAA ATPase; KEGG: afu:AF0452 hypothetical protein. | PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: pho:PH1274 formaldehyde:ferredoxin oxidoreductase. | 0.456 |
| Smar_1201 | ribK | Smar_1201 | Smar_1200 | SMART: AAA ATPase; KEGG: afu:AF0452 hypothetical protein. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.541 |
| dnaG | Smar_0913 | Smar_0889 | Smar_0913 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | PFAM: PUA domain containing protein; KEGG: mhu:Mhun_2275 uncharacterized domain 2. | 0.413 |
| dnaG | gatE | Smar_0889 | Smar_1259 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | glutamyl-tRNA(Gln) amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate. | 0.564 |
| dnaG | nac | Smar_0889 | Smar_0871 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Nascent polypeptide associated complex NAC; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | 0.670 |
| dnaG | ribK | Smar_0889 | Smar_1200 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.527 |
| gatE | dnaG | Smar_1259 | Smar_0889 | glutamyl-tRNA(Gln) amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | 0.564 |
| gatE | nac | Smar_1259 | Smar_0871 | glutamyl-tRNA(Gln) amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate. | Nascent polypeptide associated complex NAC; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | 0.564 |
| gatE | ribK | Smar_1259 | Smar_1200 | glutamyl-tRNA(Gln) amidotransferase subunit E; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate. | Protein of unknown function DUF120; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family. | 0.492 |
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