STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smar_1309PFAM: AMMECR1 domain protein; KEGG: pho:PH0010 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Smar_0821
PFAM: protein of unknown function DUF52; KEGG: sai:Saci_0089 conserved archaeal protein; Belongs to the MEMO1 family.
    0.986
Smar_1308
PFAM: protein of unknown function DUF82; KEGG: ape:APE2177 hypothetical protein.
       0.934
Smar_1306
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; KEGG: ape:APE0233 hypothetical protein.
  
    0.811
Smar_1307
PFAM: CBS domain containing protein; KEGG: ape:APE2178 hypothetical protein.
  
    0.773
Smar_1239
PFAM: Radical SAM domain protein; KEGG: ape:APE1865 pyruvate formate-lyase activating enzyme.
 
     0.763
Smar_0691
PFAM: Radical SAM domain protein; KEGG: pai:PAE3672 pyruvate formate-lyase activating enzyme homolog.
 
     0.733
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
       0.572
Smar_0407
PFAM: Radical SAM domain protein; KEGG: pai:PAE2451 pyruvate formate-lyase activating enzyme homolog.
 
     0.530
Your Current Organism:
Staphylothermus marinus
NCBI taxonomy Id: 399550
Other names: S. marinus F1, Staphylothermus marinus ATCC 43588, Staphylothermus marinus DSM 3639, Staphylothermus marinus F1, Staphylothermus marinus JCM 9404, Staphylothermus marinus str. F1, Staphylothermus marinus strain F1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.