STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_0023TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein. (696 aa)    
Predicted Functional Partners:
Pmen_0028
TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein.
 
 
 0.988
Pmen_0048
TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein.
 
 
 0.973
Pmen_0047
TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ, family 3.
 
 
 0.970
Pmen_0046
TIGRFAM: Yop virulence translocation R; PFAM: type III secretion system inner membrane P protein.
 
 
 0.950
Pmen_0039
TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein.
 
 
 0.918
Pmen_0049
TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter.
 
  
 0.890
Pmen_0041
TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase.
 
 
 0.861
Pmen_0021
Hypothetical protein.
     
 0.809
Pmen_0022
Hypothetical protein.
     
 0.803
Pmen_0024
Hypothetical protein.
     
 0.803
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.