STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_0105PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein. (242 aa)    
Predicted Functional Partners:
Pmen_0106
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase.
 
 
 0.973
Pmen_0103
Conserved hypothetical protein.
 
  
 0.952
Pmen_0100
Putative FHA domain containing protein; PFAM: Forkhead-associated protein.
 
  
 0.951
Pmen_2315
Conserved hypothetical protein.
  
 0.925
Pmen_0101
Conserved hypothetical protein.
 
  
 0.911
Pmen_2314
PFAM: protein phosphatase 2C domain protein.
  
  
 
0.911
Pmen_0104
PFAM: ImcF domain protein; protein of unknown function DUF1215.
 
  
 0.909
Pmen_0102
PFAM: protein of unknown function DUF876.
 
  
 0.891
Pmen_3182
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase.
 
 
 0.858
Pmen_2313
PFAM: protein kinase; tyrosine protein kinase; SMART: von Willebrand factor, type A; serine/threonine protein kinase.
 
 
 0.849
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.