STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_1214D-glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. (464 aa)    
Predicted Functional Partners:
Pmen_1218
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain.
 
 
 0.982
Pmen_1215
PFAM: dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.976
Pmen_0440
PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.902
Pmen_1216
D-glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein.
  
  
 
0.901
Pmen_1213
PFAM: Uncharacterized protein UPF0065.
 
     0.751
Pmen_1217
TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1.
 
  
 0.687
Pmen_1211
PFAM: protein of unknown function DUF112, transmembrane.
 
     0.618
Pmen_1212
Hypothetical protein.
       0.541
Pmen_4357
PFAM: Tannase and feruloyl esterase.
 
     0.473
Pmen_3141
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
   
 0.444
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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