STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_2328PFAM: GPW/gp25 family protein. (170 aa)    
Predicted Functional Partners:
Pmen_2327
PFAM: virulence protein, SciE type.
 
    0.994
Pmen_2317
PFAM: OmpA/MotB domain protein.
 
  
 0.978
Pmen_2322
PFAM: uncharacterised conserved protein UCP028301.
 
  
 0.975
Pmen_2329
PFAM: protein of unknown function DUF879.
 
  
 0.975
Pmen_2330
PFAM: protein of unknown function DUF1305.
 
  
 0.971
Pmen_2315
Conserved hypothetical protein.
 
  
 0.964
Pmen_2319
Conserved hypothetical protein.
 
  
 0.962
Pmen_2331
PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
 
  
 0.958
Pmen_2332
PFAM: Rhs element Vgr protein; Gp5 domain protein.
 
  
 0.948
Pmen_2323
PFAM: protein of unknown function DUF877.
 
  
 0.947
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.