STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmen_4470Mannitol ABC transporter membrane protein / sorbitol ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component. (277 aa)    
Predicted Functional Partners:
Pmen_4469
Sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component.
 0.998
Pmen_4471
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 0.997
Pmen_4468
Sorbitol-binding protein / mannitol-binding protein; PFAM: extracellular solute-binding protein, family 1.
 
 0.996
Pmen_3127
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 0.988
Pmen_1153
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 0.984
Pmen_1151
Glucose ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.944
Pmen_3131
Maltooligosaccharide ABC transporter membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.932
Pmen_2044
Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; TC 3.A.1.1.-.
 
 0.929
Pmen_4472
Fructuronate reductase; PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain.
 
  
 0.901
Pmen_2043
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
 
 
 0.898
Your Current Organism:
Pseudomonas mendocina ymp
NCBI taxonomy Id: 399739
Other names: P. mendocina ymp, Pseudomonas mendocina str. ymp, Pseudomonas mendocina strain ymp
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.