STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_4014TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA3792 hypothetical protein. (466 aa)    
Predicted Functional Partners:
Spro_4015
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: eca:ECA3793 putatuve glycosysl hydrolase; Belongs to the glycosyl hydrolase 43 family.
  
 0.898
Spro_4013
PFAM: amino acid permease-associated region; KEGG: yen:YE0695 aromatic amino acid transport protein.
       0.461
Spro_3598
Alpha-glucosidase; PFAM: glycoside hydrolase family 31; KEGG: ypi:YpsIP31758_0924 glycosyl hydrolase, family 31 protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.453
rcsA
Transcriptional regulator, LuxR family; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds to DNA to regulate expression of genes.
  
     0.450
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.