STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_4102KEGG: pap:PSPA7_4470 type IV B pilus protein. (206 aa)    
Predicted Functional Partners:
Spro_4098
KEGG: eca:ECA0557 hypothetical protein.
 
     0.947
Spro_4100
KEGG: eca:ECA0555 hypothetical protein.
 
     0.947
Spro_4099
PFAM: Lytic transglycosylase catalytic; KEGG: eca:ECA0556 hypothetical protein.
 
     0.940
Spro_4106
KEGG: plu:plu1038 hypothetical protein.
 
     0.850
Spro_0303
KEGG: stt:t4228 hypothetical protein.
 
     0.782
Spro_0322
KEGG: eca:ECA0555 hypothetical protein.
 
     0.782
Spro_0324
KEGG: eca:ECA0557 hypothetical protein.
 
     0.782
Spro_0326
KEGG: eca:ECA0560 putative plasmid transfer protein.
 
     0.782
Spro_4096
KEGG: eca:ECA0560 putative plasmid transfer protein.
 
     0.782
Spro_4101
KEGG: stt:t4255 hypothetical protein.
       0.782
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.