STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_4239PFAM: chitin-binding domain 3 protein; KEGG: asa:ASA_0604 chitin-binding protein, carbohydrate-binding module family 33. (471 aa)    
Predicted Functional Partners:
Spro_3105
PFAM: chitin-binding domain 3 protein; KEGG: vco:VC0395_1137 putative chitinase.
  
   
 0.845
Spro_1223
PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; Fibronectin type III domain protein; KEGG: pfl:PFL_2091 chitinase; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.817
Spro_0137
Chitinase; KEGG: sbl:Sbal_3083 chitinase; PFAM: glycoside hydrolase family 18; Chitinase A domain protein; SMART: PKD domain containing protein; chitinase II; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.779
Spro_3476
Chitinase; KEGG: sde:Sde_3870 chitinase; PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.655
Spro_4238
PFAM: cytochrome B561; KEGG: ppr:PBPRB0313 hypothetical protein.
 
     0.635
Spro_3046
KEGG: aha:AHA_0614 hypothetical protein.
  
     0.556
Spro_0571
Type II site-specific deoxyribonuclease; PFAM: Restriction endonuclease EcoRII; KEGG: acr:Acry_3581 hypothetical protein.
  
     0.527
Spro_4237
KEGG: bxe:Bxe_A4151 hypothetical protein.
 
     0.511
Spro_3601
Peptidase M4 thermolysin; Extracellular zinc metalloprotease.
   
  
 0.493
Spro_1804
PFAM: ImpA domain protein; KEGG: ent:Ent638_2906 ImpA domain protein.
  
     0.479
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.