STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_4898Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: yen:YE0011 putative D-ribose-binding periplasmic protein precursor. (296 aa)    
Predicted Functional Partners:
Spro_4899
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: yen:YE0010 putative sugar transport system, permease protein.
 0.996
rbsA-3
ABC transporter-related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.992
rbsD
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.971
Spro_1030
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: kpn:KPN_04488 putative carbohydrate ABC transport system permease.
  0.965
Spro_3930
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: pmu:PM1250 ribose transport system permease.
 0.950
Spro_2395
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: kpn:KPN_00509 putative periplasmic binding protein.
  
  
 
0.926
Spro_1031
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: kpn:KPN_04487 D-ribose periplasmic binding protein.
  
  
 
0.921
Spro_3931
Conserved hypothetical protein; KEGG: pmu:PM1249 unknown.
     
  0.900
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.885
rbsA
ABC transporter-related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.875
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.