node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplD | rpsB | Ent638_3750 | Ent638_0707 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
rplD | rpsC | Ent638_3750 | Ent638_3745 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsF | Ent638_3750 | Ent638_0371 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.990 |
rplD | rpsG | Ent638_3750 | Ent638_3758 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
rplD | rpsH | Ent638_3750 | Ent638_3737 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
rplD | rpsL | Ent638_3750 | Ent638_3759 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
rplD | rpsM | Ent638_3750 | Ent638_3729 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplD | rpsO | Ent638_3750 | Ent638_3602 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.998 |
rplD | rpsP | Ent638_3750 | Ent638_3090 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | PFAM: ribosomal protein S16; KEGG: sdy:SDY_2783 30S ribosomal subunit protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.990 |
rplD | rpsS | Ent638_3750 | Ent638_3747 | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
rpsB | rplD | Ent638_0707 | Ent638_3750 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.998 |
rpsB | rpsC | Ent638_0707 | Ent638_3745 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rpsB | rpsF | Ent638_0707 | Ent638_0371 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.998 |
rpsB | rpsG | Ent638_0707 | Ent638_3758 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
rpsB | rpsH | Ent638_0707 | Ent638_3737 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.998 |
rpsB | rpsL | Ent638_0707 | Ent638_3759 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. | 0.999 |
rpsB | rpsM | Ent638_0707 | Ent638_3729 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rpsB | rpsO | Ent638_0707 | Ent638_3602 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.998 |
rpsB | rpsP | Ent638_0707 | Ent638_3090 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | PFAM: ribosomal protein S16; KEGG: sdy:SDY_2783 30S ribosomal subunit protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
rpsB | rpsS | Ent638_0707 | Ent638_3747 | PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal subunit protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.998 |