A0A1X7T700 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7T700

Uncharacterized protein. (405 aa)

Predicted Functional Partners:

A0A1X7SM10

0.697

A0A1X7UQL7

0.697

A0A1X7UQX0

0.697

A0A1X7URC1

0.697

A0A1X7URP0

0.697

A0A1X7V2U1

0.697

A0A1X7VB46

0.580

A0A1X7V3P1

0.508

A0A1X7V1X6

0.507

A0A1X7TPV9

0.485

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7SM10	A0A1X7T700	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A1X7SM10	A0A1X7UQL7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.980
A0A1X7SM10	A0A1X7UQX0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.980
A0A1X7SM10	A0A1X7URC1	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1X7SM10	A0A1X7URP0	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A1X7SM10	A0A1X7V2U1	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A1X7SM10	A0A1X7V3P1	Uncharacterized protein.	Uncharacterized protein.	0.842
A0A1X7T700	A0A1X7SM10	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A1X7T700	A0A1X7TPV9	Uncharacterized protein.	Uncharacterized protein.	0.485
A0A1X7T700	A0A1X7UQL7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.697
A0A1X7T700	A0A1X7UQX0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.697
A0A1X7T700	A0A1X7URC1	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A1X7T700	A0A1X7URP0	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A1X7T700	A0A1X7V1X6	Uncharacterized protein.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.507
A0A1X7T700	A0A1X7V2U1	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A1X7T700	A0A1X7V3P1	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A1X7T700	A0A1X7VB46	Uncharacterized protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.580
A0A1X7TPV9	A0A1X7T700	Uncharacterized protein.	Uncharacterized protein.	0.485
A0A1X7TPV9	A0A1X7V1X6	Uncharacterized protein.	Uncharacterized protein; Belongs to the GroES chaperonin family.	0.822
A0A1X7TPV9	A0A1X7V3P1	Uncharacterized protein.	Uncharacterized protein.	0.608