A0A1X7VQD9 protein (Amphimedon queenslandica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X7VQD9

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (341 aa)

Predicted Functional Partners:

A0A1X7V1K1

0.869

A0A1X7VLA5

0.862

A0A1X7VF25

0.824

A0A1X7VKT6

0.820

A0A1X7UY86

0.776

A0A1X7VDU2

0.775

A0A1X7U483

0.766

A0A1X7TLH1

0.758

A0A1X7VFL0

0.757

A0A1X7V7J1

0.753

Your Current Organism:

Amphimedon queenslandica

NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X7TLH1	A0A1X7U483	WD_REPEATS_REGION domain-containing protein.	Autophagy-related protein 3.	0.998
A0A1X7TLH1	A0A1X7UY86	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.684
A0A1X7TLH1	A0A1X7V1K1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.904
A0A1X7TLH1	A0A1X7V7J1	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.999
A0A1X7TLH1	A0A1X7VDU2	WD_REPEATS_REGION domain-containing protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.726
A0A1X7TLH1	A0A1X7VF25	WD_REPEATS_REGION domain-containing protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.728
A0A1X7TLH1	A0A1X7VFL0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.655
A0A1X7TLH1	A0A1X7VKT6	WD_REPEATS_REGION domain-containing protein.	ATG11 domain-containing protein.	0.986
A0A1X7TLH1	A0A1X7VLA5	WD_REPEATS_REGION domain-containing protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.882
A0A1X7TLH1	A0A1X7VQD9	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.758
A0A1X7U483	A0A1X7TLH1	Autophagy-related protein 3.	WD_REPEATS_REGION domain-containing protein.	0.998
A0A1X7U483	A0A1X7UY86	Autophagy-related protein 3.	Uncharacterized protein.	0.667
A0A1X7U483	A0A1X7V1K1	Autophagy-related protein 3.	Uncharacterized protein.	0.913
A0A1X7U483	A0A1X7V7J1	Autophagy-related protein 3.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.999
A0A1X7U483	A0A1X7VDU2	Autophagy-related protein 3.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.655
A0A1X7U483	A0A1X7VF25	Autophagy-related protein 3.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.655
A0A1X7U483	A0A1X7VFL0	Autophagy-related protein 3.	Uncharacterized protein.	0.655
A0A1X7U483	A0A1X7VKT6	Autophagy-related protein 3.	ATG11 domain-containing protein.	0.655
A0A1X7U483	A0A1X7VLA5	Autophagy-related protein 3.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.885
A0A1X7U483	A0A1X7VQD9	Autophagy-related protein 3.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.766