STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X7VQM3Tr-type G domain-containing protein. (985 aa)    
Predicted Functional Partners:
A0A1X7VCM2
Uncharacterized protein.
   
 0.975
A0A1X7UF89
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.973
A0A1X7VBT5
WD_REPEATS_REGION domain-containing protein.
   
 0.971
A0A1X7VQA6
Sm domain-containing protein.
   
 0.968
A0A1X7TPN8
Small nuclear ribonucleoprotein Sm D3.
   
 0.963
A0A1X7VV84
Small nuclear ribonucleoprotein Sm D2.
   
 0.963
A0A1X7VLA3
Small nuclear ribonucleoprotein G.
   
 0.957
A0A1X7VVB2
CPSF_A domain-containing protein.
   
 
 0.952
A0A1X7VDS0
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.947
A0A1X7VTA9
Nop domain-containing protein.
   
 0.945
Your Current Organism:
Amphimedon queenslandica
NCBI taxonomy Id: 400682
Other names: A. queenslandica, Amphimedon queenslandica Hooper & Van Soest, 2006, Reniera sp. JGI-2005
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.