C0Q70_05249 protein (Pomacea canaliculata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C0Q70_05249

Integrase catalytic domain-containing protein. (554 aa)

Predicted Functional Partners:

C0Q70_19247

0.949

C0Q70_05025

0.947

C0Q70_18188

0.866

C0Q70_11275

0.660

C0Q70_13936

0.655

C0Q70_07878

0.630

C0Q70_18421

0.616

C0Q70_05024

0.556

C0Q70_14425

0.549

C0Q70_03405

0.546

Your Current Organism:

Pomacea canaliculata

NCBI taxonomy Id: 400727
Other names: P. canaliculata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C0Q70_03405	C0Q70_05249	A0A2T7PSM3	A0A2T7PKT0	Reverse transcriptase domain-containing protein.	Integrase catalytic domain-containing protein.	0.546
C0Q70_03405	C0Q70_13936	A0A2T7PSM3	A0A2T7NYN2	Reverse transcriptase domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.655
C0Q70_05024	C0Q70_05249	A0A2T7PK41	A0A2T7PKT0	Reverse transcriptase domain-containing protein.	Integrase catalytic domain-containing protein.	0.556
C0Q70_05024	C0Q70_13936	A0A2T7PK41	A0A2T7NYN2	Reverse transcriptase domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.655
C0Q70_05025	C0Q70_05249	A0A2T7PK02	A0A2T7PKT0	Reverse transcriptase domain-containing protein.	Integrase catalytic domain-containing protein.	0.947
C0Q70_05025	C0Q70_13936	A0A2T7PK02	A0A2T7NYN2	Reverse transcriptase domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.655
C0Q70_05249	C0Q70_03405	A0A2T7PKT0	A0A2T7PSM3	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.546
C0Q70_05249	C0Q70_05024	A0A2T7PKT0	A0A2T7PK41	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.556
C0Q70_05249	C0Q70_05025	A0A2T7PKT0	A0A2T7PK02	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.947
C0Q70_05249	C0Q70_07878	A0A2T7PKT0	A0A2T7PG93	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.630
C0Q70_05249	C0Q70_11275	A0A2T7PKT0	A0A2T7P5K0	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.660
C0Q70_05249	C0Q70_13936	A0A2T7PKT0	A0A2T7NYN2	Integrase catalytic domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.655
C0Q70_05249	C0Q70_14425	A0A2T7PKT0	A0A2T7P000	Integrase catalytic domain-containing protein.	CCHC-type domain-containing protein.	0.549
C0Q70_05249	C0Q70_18188	A0A2T7PKT0	A0A2T7NMI7	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.866
C0Q70_05249	C0Q70_18421	A0A2T7PKT0	A0A2T7NN71	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.616
C0Q70_05249	C0Q70_19247	A0A2T7PKT0	A0A2T7NIS6	Integrase catalytic domain-containing protein.	Reverse transcriptase domain-containing protein.	0.949
C0Q70_07878	C0Q70_05249	A0A2T7PG93	A0A2T7PKT0	Reverse transcriptase domain-containing protein.	Integrase catalytic domain-containing protein.	0.630
C0Q70_07878	C0Q70_13936	A0A2T7PG93	A0A2T7NYN2	Reverse transcriptase domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.655
C0Q70_11275	C0Q70_05249	A0A2T7P5K0	A0A2T7PKT0	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.660
C0Q70_11275	C0Q70_13936	A0A2T7P5K0	A0A2T7NYN2	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.655