STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC53738.1Glutaconate CoA-transferase subunit A. (274 aa)    
Predicted Functional Partners:
SFC53726.1
Glutaconate CoA-transferase subunit B.
 0.999
SFC53707.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.969
SFC53685.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
 
 
 0.961
SFC53789.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
 
 0.737
SFC53811.1
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
 
 0.725
SFC47353.1
acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.
  
  
 0.724
SFC53759.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.723
SFC46937.1
hydroxymethylglutaryl-CoA lyase.
  
 
 0.696
SFC30944.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
  
 
 0.646
SFC47439.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.643
Your Current Organism:
Kushneria avicenniae
NCBI taxonomy Id: 402385
Other names: CCM 7396, CECT 7193, CIP 109711, DSM 23439, Halomonas avicenniae, Halomonas avicenniae Soto-Ramirez et al. 2007, K. avicenniae, Kushneria avicenniae (Soto-Ramirez et al. 2007) Sanchez-Porro et al. 2009, strain MW2a
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