STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (362 aa)    
Predicted Functional Partners:
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
 
 0.998
bioA
Adenosylmethionine--8-amino-7-oxononanoate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.984
birA
Probable biotin--[acetyl-CoA-carboxylase] ligase.
  
 
 0.929
bioF
8-amino-7-oxononanoate synthase.
 
 0.876
kbl
Glycine C-acetyltransferase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
 
 0.708
FP1804
Aminocarboxylic acid CoA-ligase.
 
 
 0.708
ribF
Bifunctional riboflavin biosynthesis protein RibF : Riboflavin kinase and FMN adenylyltransferase; Belongs to the ribF family.
     
 0.536
rocD
Ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
 0.522
argD
Acetylornithine/succinyldiaminopimelate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
 0.521
FP1598
Protein of unknown function.
    
  0.452
Your Current Organism:
Flavobacterium psychrophilum
NCBI taxonomy Id: 402612
Other names: F. psychrophilum JIP02/86, Flavobacterium psychrophilum JIP02/86, Flavobacterium psychrophilum str. JIP02/86, Flavobacterium psychrophilum strain JIP02/86
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