STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpic_1268PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc1395 probable transmembrane protein. (306 aa)    
Predicted Functional Partners:
Rpic_1267
PFAM: aminotransferase class I and II; KEGG: rso:RSc1394 hypothetical protein.
 
     0.650
Rpic_1269
PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1396 putative transmembrane protein.
       0.648
Rpic_3378
PFAM: Domain of unknown function DUF1835; KEGG: rso:RSc3094 hypothetical protein.
  
     0.523
dapD
TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: bch:Bcen2424_2030 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase.
  
    0.521
Rpic_1271
ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
 
     0.503
Rpic_2127
KEGG: rso:RSc1973 putative osmotically inducible lipoprotein B1 transmembrane.
  
     0.485
Rpic_3494
PFAM: sodium/hydrogen exchanger; KEGG: rso:RSc3299 hypothetical protein.
 
    0.454
Rpic_3034
TIGRFAM: MJ0042 family finger-like protein; KEGG: rso:RSc2789 probable transmembrane protein.
  
     0.439
Rpic_0921
PFAM: Anti sigma-E protein RseA family protein; KEGG: rso:RSc1056 putative transmembrane sigma-E factor negative regulatory transcription regulator protein.
  
     0.427
Rpic_0800
KEGG: rso:RSc0929 probable transmembrane protein.
  
     0.419
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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