STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpic_4015Nitrite reductase, copper-containing; KEGG: rso:RS03038 probable major anaerobically induced outer membrane transmembrane protein; TIGRFAM: nitrite reductase, copper-containing; PFAM: blue (type 1) copper domain protein; multicopper oxidase type 1; cytochrome c class I; multicopper oxidase type 2; multicopper oxidase type 3. (499 aa)    
Predicted Functional Partners:
Rpic_4013
KEGG: rso:RSp1505 probable nitric oxide reductase (subunit B) transmembrane protein.
 
 0.996
Rpic_4872
PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: rso:RSp1564 probable cytochrome c oxidase polypeptide II (cytochrome BB3 subunit 2) transmembrane protein.
  
 
 0.961
Rpic_2520
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: bam:Bamb_5711 nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.955
Rpic_4669
TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rso:RSp0974 probable respiratory nitrate reductase alpha chain oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.955
Rpic_4167
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSp1219 probable nitrate reductase large subunit oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.947
Rpic_2519
TIGRFAM: nitrate reductase, beta subunit; KEGG: bte:BTH_II1250 nitrate reductase, beta subunit.
  
 0.944
Rpic_4670
TIGRFAM: nitrate reductase, beta subunit; KEGG: rso:RSp0975 probable respiratory nitrate reductase oxidoreductase protein.
  
 0.944
Rpic_4016
PFAM: protein of unknown function DUF323; KEGG: rso:RS03039 probable signal peptide protein.
 
     0.941
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
 0.940
Rpic_4017
PFAM: electron transport protein SCO1/SenC; KEGG: rso:RS03040 probable signal peptide protein.
 
  
 0.921
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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