STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rpic_4737Glutamine--scyllo-inositol transaminase; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rle:RL0240 putative perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family. (383 aa)    
Predicted Functional Partners:
Rpic_1157
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: bte:BTH_I1332 GDP-6-deoxy-D-lyxo-4-hexulose reductase, putative.
 
 
 0.922
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
 
 0.911
Rpic_4734
TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pfo:Pfl_1510 nucleotidyl transferase.
  
  
 0.887
Rpic_4735
TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: acr:Acry_0592 CDP-glucose 4,6-dehydratase.
 
  
 0.852
Rpic_4741
PFAM: WbqC-like family protein; KEGG: azc:AZC_3473 hypothetical protein.
 
  
 0.851
Rpic_4736
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.837
Rpic_4742
PFAM: glycosyl transferase family 2; KEGG: azc:AZC_3476 glycosyltransferase.
 
  
 0.834
Rpic_4738
PFAM: Phytanoyl-CoA dioxygenase; KEGG: azc:AZC_3474 putative phytanoil-CoA alpha hydroxylase.
 
     0.821
Rpic_4739
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: azc:AZC_3475 hypothetical protein.
 
     0.811
Rpic_4740
PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_3472 putative acetyltransferase.
  
  
 0.808
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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