STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pfdAPrefoldin, alpha subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. (144 aa)    
Predicted Functional Partners:
pfdB
Prefoldin, beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
 
 0.998
ABO34377.1
TIGRFAM: thermosome; PFAM: chaperonin Cpn60/TCP-1; KEGG: mmp:MMP1515 chaperonin GroEL (thermosome, HSP60 family).
  
 
 0.971
ABO34426.1
Membrane-bound hydrogenase subunit ehbA; PFAM: cation antiporter; KEGG: mmp:MMP1469 hypothetical protein.
 
     0.935
rpl31e
PFAM: Ribosomal protein L31e; KEGG: mmp:MMP0062 ribosomal protein L31e; Belongs to the eukaryotic ribosomal protein eL31 family.
 
  
 0.828
ABO34608.1
PFAM: formate/nitrite transporter; KEGG: mmp:MMP1301 formate transporter.
    
 
 0.811
ABO35815.1
PFAM: DNA-binding TFAR19-related protein; KEGG: mmp:MMP0157 hypothetical protein; Belongs to the PDCD5 family.
  
   0.772
rpl21e
PFAM: ribosomal protein L21e; KEGG: mmp:MMP0093 ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
 
    0.665
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: mmp:MMP0669 SSU ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family.
  
    0.653
rpl5
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
  
  
 0.617
rpl30
TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30; KEGG: mmp:MMP1420 LSU ribosomal protein L30P.
 
  
 0.602
Your Current Organism:
Methanococcus maripaludis C5
NCBI taxonomy Id: 402880
Other names: M. maripaludis C5, Methanococcus maripaludis str. C5, Methanococcus maripaludis strain C5
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