STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO35052.1PFAM: Protein of unknown function UPF0254; KEGG: mmp:MMP0935 hypothetical protein; Belongs to the UPF0254 family. (165 aa)    
Predicted Functional Partners:
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
    0.812
ABO35054.1
Coenzyme F420-0 gamma-glutamyl ligase; TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: mmp:MMP0937 F420-0:gamma-L-glutamate ligase.
       0.786
ABO35051.1
PFAM: Protein of unknown function DUF439; KEGG: mmp:MMP0934 hypothetical protein.
       0.541
ABO34396.1
PFAM: Protein of unknown function DUF1188; KEGG: mmp:MMP1498 hypothetical protein.
     
 0.522
ABO34664.1
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: mmp:MMP1243 hypothetical protein.
     
 0.512
ABO34397.1
KEGG: mmp:MMP1497 hypothetical protein.
     
 0.482
ABO35849.1
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mmp:MMP0126 biotin synthase.
     
 0.469
Your Current Organism:
Methanococcus maripaludis C5
NCBI taxonomy Id: 402880
Other names: M. maripaludis C5, Methanococcus maripaludis str. C5, Methanococcus maripaludis strain C5
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