node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABO34466.1 | ABO34582.1 | MmarC5_0149 | MmarC5_0266 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | 0.999 |
ABO34466.1 | ABO34587.1 | MmarC5_0149 | MmarC5_0271 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | PFAM: RNA polymerase, dimerisation; RNA polymerase, insert; SMART: RNA polymerase, RpoA/D/Rpb3-type; KEGG: mmp:MMP1322 DNA-directed RNA polymerase, subunit D. | 0.999 |
ABO34466.1 | ABO34687.1 | MmarC5_0149 | MmarC5_0371 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA repair helicase RAD3; SMART: DEXDc2; helicase c2; DEAD-like helicases-like; KEGG: mmp:MMP1219 putative DinG ATP-dependent helicase. | 0.991 |
ABO34466.1 | ABO35723.1 | MmarC5_0149 | MmarC5_1425 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | SMART: RNA polymerase Rbp10; KEGG: mmp:MMP0248 DNA-directed RNA polymerase related protein. | 0.999 |
ABO34466.1 | rpoH | MmarC5_0149 | MmarC5_0218 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA-directed RNA polymerase, subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.999 |
ABO34466.1 | rpoN | MmarC5_0149 | MmarC5_0267 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.999 |
ABO34466.1 | tbp | MmarC5_0149 | MmarC5_0612 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.982 |
ABO34466.1 | tbp-2 | MmarC5_0149 | MmarC5_1416 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.983 |
ABO34466.1 | tfb | MmarC5_0149 | MmarC5_1639 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | Transcription initiation factor IIB (TFIIB); Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). | 0.997 |
ABO34466.1 | tfe | MmarC5_0149 | MmarC5_1644 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | Transcription factor IIE (TFIIE), alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elo [...] | 0.993 |
ABO34582.1 | ABO34466.1 | MmarC5_0266 | MmarC5_0149 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: mmp:MMP1429 transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa subunit; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | 0.999 |
ABO34582.1 | ABO34587.1 | MmarC5_0266 | MmarC5_0271 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | PFAM: RNA polymerase, dimerisation; RNA polymerase, insert; SMART: RNA polymerase, RpoA/D/Rpb3-type; KEGG: mmp:MMP1322 DNA-directed RNA polymerase, subunit D. | 0.999 |
ABO34582.1 | ABO34687.1 | MmarC5_0266 | MmarC5_0371 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | DNA repair helicase RAD3; SMART: DEXDc2; helicase c2; DEAD-like helicases-like; KEGG: mmp:MMP1219 putative DinG ATP-dependent helicase. | 0.995 |
ABO34582.1 | ABO35723.1 | MmarC5_0266 | MmarC5_1425 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | SMART: RNA polymerase Rbp10; KEGG: mmp:MMP0248 DNA-directed RNA polymerase related protein. | 0.999 |
ABO34582.1 | rpoH | MmarC5_0266 | MmarC5_0218 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | DNA-directed RNA polymerase, subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.999 |
ABO34582.1 | rpoN | MmarC5_0266 | MmarC5_0267 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | DNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.999 |
ABO34582.1 | tbp | MmarC5_0266 | MmarC5_0612 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.960 |
ABO34582.1 | tbp-2 | MmarC5_0266 | MmarC5_1416 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.965 |
ABO34582.1 | tfb | MmarC5_0266 | MmarC5_1639 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | Transcription initiation factor IIB (TFIIB); Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). | 0.996 |
ABO34582.1 | tfe | MmarC5_0266 | MmarC5_1644 | PFAM: RNA polymerase Rpb6; KEGG: mmp:MMP1327 DNA-directed RNA polymerase, subunit K. | Transcription factor IIE (TFIIE), alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elo [...] | 0.996 |