STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0926PFAM: nitroreductase; KEGG: reu:Reut_B3607 nitroreductase. (223 aa)    
Predicted Functional Partners:
Plav_0925
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_5358 acyl-CoA dehydrogenase-like protein.
     
 0.703
Plav_0924
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_5357 acyl-CoA dehydrogenase-like protein.
     
 0.688
Plav_0923
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mgi:Mflv_0296 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.655
Plav_0927
PFAM: Propeptide PepSY amd peptidase M4.
       0.566
Plav_0929
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: bra:BRADO2729 putative two-component sensor histidine kinase.
     
 0.509
Plav_0928
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: atc:AGR_C_1778 PopP protein.
       0.502
Plav_1787
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_3865 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.463
Plav_1504
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: gsu:GSU2686 ABC transporter, ATP-binding protein.
  
  
 0.457
Plav_3446
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related.
  
  
 0.457
Plav_1964
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bra:BRADO6238 glutamate synthase [NADPH] large chain (NADPH-GOGAT).
     
 0.442
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.