STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2082PFAM: protein of unknown function DUF465; KEGG: nwi:Nwi_1004 protein of unknown function DUF465. (59 aa)    
Predicted Functional Partners:
Plav_2080
PFAM: protein of unknown function DUF465; KEGG: rpc:RPC_3958 protein of unknown function DUF465.
 
     0.678
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.606
Plav_2813
KEGG: rsh:Rsph17029_2068 hypothetical protein.
  
     0.604
Plav_1612
PFAM: Hypoxia induced protein conserved region; KEGG: rpc:RPC_4882 hypothetical protein.
  
     0.533
Plav_0305
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpc:RPC_0820 periplasmic sensor signal transduction histidine kinase.
  
     0.521
Plav_1328
PFAM: protein of unknown function DUF1674; KEGG: mlo:msl4095 hypothetical protein.
  
     0.515
Plav_0600
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
 
     0.513
Plav_1396
KEGG: rle:RL4534 hypothetical protein.
  
     0.476
Plav_0599
Histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); KEGG: rpa:RPA1150 ATP phosphoribosyltransferase regulatory subunit.
 
     0.454
Plav_2173
KEGG: bbt:BBta_6560 hypothetical protein.
  
     0.447
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.