STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2349KEGG: mca:MCA1886 hypothetical protein. (201 aa)    
Predicted Functional Partners:
Plav_2348
TIGRFAM: type I restriction-modification system, M subunit; PFAM: putative RNA methylase; N-6 DNA methylase; Eco57I restriction endonuclease; KEGG: mca:MCA1888 type I restriction-modification system, M subunit.
 
 
 0.999
Plav_2344
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.987
Plav_2346
PFAM: restriction modification system DNA specificity domain; KEGG: lpc:LPC_2789 hypothetical protein.
 
     0.951
Plav_2347
KEGG: nwi:Nwi_3119 putative DNA-binding protein.
 
    0.940
Plav_2343
PFAM: protein of unknown function DUF45; KEGG: mca:MCA1894 hypothetical protein.
 
    0.913
Plav_2345
KEGG: nwi:Nwi_3122 hypothetical protein.
 
  
 0.889
Plav_1680
Hypothetical protein; KEGG: nmu:Nmul_A0143 ATP-dependent endonuclease of the OLD family-like.
  
  
 0.655
Plav_3408
KEGG: har:HEAR1999 hypothetical protein.
  
  
 0.655
Plav_1179
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0482 divergent AAA ATP.
 
    0.606
Plav_3556
Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0482 divergent AAA ATP.
 
    0.606
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.