STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3268KEGG: abo:ABO_1416 hypothetical protein. (378 aa)    
Predicted Functional Partners:
Plav_3237
PFAM: Phosphoglycerate mutase; KEGG: hne:HNE_2081 phosphoglycerate mutase family protein.
  
     0.705
Plav_1126
KEGG: eli:ELI_09820 hypothetical protein.
  
     0.690
Plav_3069
PFAM: protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: hypothetical protein.
  
     0.657
Plav_0477
KEGG: hypothetical protein.
  
   
 0.641
Plav_3609
KEGG: mag:amb4407 hypothetical protein.
  
     0.558
Plav_3269
KEGG: mag:amb2682 hypothetical protein.
       0.542
Plav_0847
PFAM: OmpA/MotB domain protein; KEGG: pau:PA14_53500 hypothetical protein.
 
     0.518
Plav_0894
KEGG: nar:Saro_2217 integral membrane protein-like.
  
     0.506
Plav_0840
KEGG: nar:Saro_2217 integral membrane protein-like.
  
     0.488
Plav_3039
KEGG: mmr:Mmar10_1897 hypothetical protein.
  
     0.480
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.