STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDT08091.1TonB-dependent siderophore receptor. (807 aa)    
Predicted Functional Partners:
CDT08100.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.832
CDT08112.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.740
CDT08160.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.729
CDT08131.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.713
CDT08139.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.693
CDT08121.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.681
CDT08149.1
Hydrogenase accessory protein HypB.
 
     0.661
CDT09166.1
Putative TonB protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.636
CDS92238.1
Putative Anti-FecI sigma factor, FecR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   0.624
CDS98190.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   0.605
Your Current Organism:
Sphingobacterium sp. PM2P129
NCBI taxonomy Id: 403776
Other names: S. sp. PM2-P1-29, Sphingobacterium sp. PM2-P1-29
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.