node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pmob_0948 | Pmob_1450 | Pmob_0948 | Pmob_1450 | PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mba:Mbar_A0145 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | PFAM: RNA binding S1 domain protein; KEGG: tme:Tmel_1764 ribonuclease, Rne/Rng family. | 0.684 |
Pmob_0948 | infB | Pmob_0948 | Pmob_0255 | PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mba:Mbar_A0145 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.449 |
Pmob_0948 | pnp | Pmob_0948 | Pmob_0569 | PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mba:Mbar_A0145 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.885 |
Pmob_0948 | rpoB | Pmob_0948 | Pmob_0355 | PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mba:Mbar_A0145 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.499 |
Pmob_0948 | rpsD | Pmob_0948 | Pmob_0763 | PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mba:Mbar_A0145 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.685 |
Pmob_0948 | rpsO | Pmob_0948 | Pmob_0568 | PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mba:Mbar_A0145 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.632 |
Pmob_1450 | Pmob_0948 | Pmob_1450 | Pmob_0948 | PFAM: RNA binding S1 domain protein; KEGG: tme:Tmel_1764 ribonuclease, Rne/Rng family. | PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mba:Mbar_A0145 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.684 |
Pmob_1450 | Pmob_1535 | Pmob_1450 | Pmob_1535 | PFAM: RNA binding S1 domain protein; KEGG: tme:Tmel_1764 ribonuclease, Rne/Rng family. | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | 0.684 |
Pmob_1450 | pnp | Pmob_1450 | Pmob_0569 | PFAM: RNA binding S1 domain protein; KEGG: tme:Tmel_1764 ribonuclease, Rne/Rng family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.923 |
Pmob_1450 | rho | Pmob_1450 | Pmob_0034 | PFAM: RNA binding S1 domain protein; KEGG: tme:Tmel_1764 ribonuclease, Rne/Rng family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.442 |
Pmob_1535 | Pmob_1450 | Pmob_1535 | Pmob_1450 | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | PFAM: RNA binding S1 domain protein; KEGG: tme:Tmel_1764 ribonuclease, Rne/Rng family. | 0.684 |
Pmob_1535 | infB | Pmob_1535 | Pmob_0255 | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.822 |
Pmob_1535 | pnp | Pmob_1535 | Pmob_0569 | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.892 |
Pmob_1535 | rho | Pmob_1535 | Pmob_0034 | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.445 |
Pmob_1535 | rpoB | Pmob_1535 | Pmob_0355 | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
Pmob_1535 | rpsD | Pmob_1535 | Pmob_0763 | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | RNA-binding S4 domain protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.685 |
Pmob_1535 | rpsO | Pmob_1535 | Pmob_0568 | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.634 |
infB | Pmob_0948 | Pmob_0255 | Pmob_0948 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mba:Mbar_A0145 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. | 0.449 |
infB | Pmob_1535 | Pmob_0255 | Pmob_1535 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfu:Sfum_0411 helicase domain protein. | 0.822 |
infB | nusA | Pmob_0255 | Pmob_0530 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.973 |