STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pmob_0669PFAM: Radical SAM domain protein; KEGG: tma:TM1324 AstB/ChuR-related protein. (450 aa)    
Predicted Functional Partners:
Pmob_0668
PFAM: Radical SAM domain protein; KEGG: tma:TM1325 AstB/ChuR-related protein.
 
    
0.847
Pmob_1565
PFAM: Radical SAM domain protein; KEGG: tme:Tmel_0095 radical SAM domain protein.
  
     0.725
Pmob_1047
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bsu:BG12471 subtilosin production.
 
   
 0.602
Pmob_1054
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1310 ABC transporter, ATP-binding protein.
  
     0.561
Pmob_1519
PFAM: Radical SAM domain protein; KEGG: afu:AF2009 heme biosynthesis protein (NirJ-2).
 
   
 0.490
Your Current Organism:
Petrotoga mobilis
NCBI taxonomy Id: 403833
Other names: P. mobilis SJ95, Petrotoga mobilis DSM 10674, Petrotoga mobilis SJ95, Petrotoga mobilis str. SJ95, Petrotoga mobilis strain SJ95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.