STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfBAlpha-L-arabinofuranosidase B; Alpha-L-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Able to hydrolyze 1,5-, 1,3- and 1,2-alpha-linkages not only in L- arabinofuranosyl oligosaccharides, but also in polysaccharides containing terminal non-reducing L-arabinofuranoses in side chains, like L-arabinan, arabinogalactan and arabinoxylan. Belongs to the glycosyl hydrolase 54 family. (499 aa)    
Predicted Functional Partners:
AKAW_07690
Alpha-L-arabinofuranosidase.
     
 0.988
AKAW_08361
Alpha-L-arabinofuranosidase.
     
 0.970
abfA
Alpha-L-arabinofuranosidase A; Alpha-L-arabinofuranosidase involved in the degradation of arabinoxylan, a major component of plant hemicellulose. Acts only on small linear 1,5-alpha-linked L-arabinofuranosyl oligosaccharides.
     
 0.970
AKAW_05756
Exopolygalacturonase X; Belongs to the glycosyl hydrolase 28 family.
     
 0.951
AKAW_10028
Alpha-L-arabinofuranosidase E.
     
 0.927
AKAW_05436
Polygalacturonase (PgaI).
     
 0.883
AKAW_09165
Endo-xylogalacturonan hydrolase A; Belongs to the glycosyl hydrolase 28 family.
     
 0.882
pgaII
Probable endopolygalacturonase II; Involved in maceration and soft-rotting of plant tissue. Hydrolyzes the 1,4-alpha glycosidic bonds of de-esterified pectate in the smooth region of the plant cell wall (By similarity).
     
 0.839
AKAW_11103
Hydrolase.
 
   
 0.832
AKAW_06538
Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.
   
 0.830
Your Current Organism:
Aspergillus kawachii
NCBI taxonomy Id: 1033177
Other names: A. kawachii IFO 4308, Aspergillus kawachii IFO 4308
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