STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_0684(S)-methylmalonyl-CoA decarboxylase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)    
Predicted Functional Partners:
Gbem_2832
Short-chain acyl-CoA dehydrogenase.
 
 0.967
Gbem_1415
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.960
Gbem_2127
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.960
Gbem_1414
acyl-CoA synthetase, ADP-forming.
  
 
 0.926
acuI
NADP-dependent menaquinol:acrylyl-CoA oxidoreductase.
  
 0.916
pta
Phosphate acetyltransferase.
    
 0.905
mceE
methylmalonyl-CoA epimerase.
     
 0.904
Gbem_0982
BioD and DRTGG domain protein.
     
 0.901
Gbem_4048
BioD and DRTGG domain protein.
     
 0.901
Gbem_0334
Oxaloacetate decarboxylase, carboxyltransferase subunit.
     
 0.900
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.