STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifSNitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (389 aa)    
Predicted Functional Partners:
nifU
Nitrogen fixation iron-sulfur cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.999
moeB
Molybdopterin biosynthesis sulfur carrier protein sulfurylase.
   
 0.963
Gbem_0089
Rhodanese homology domain pair protein.
   
 0.921
iscR
Helix-turn-helix iron-sulfur cluster-binding transcriptional regulator IscR.
 
  
 0.874
Gbem_2484
Winged helix-turn-helix transcriptional regulator, Rrf2 family.
  
  
 0.856
selD
Selenide, water dikinase, selenocysteine-containing; Synthesizes selenophosphate from selenide and ATP.
    
 0.832
tusA
tRNA (5-carboxymethylaminomethyl-2-thio-U34) synthesis sulfur carrier protein.
   
 
 0.802
yedF
Selenium metabolism protein YedF, putative; Belongs to the sulfur carrier protein TusA family.
   
 
 0.802
Gbem_2220
Hypothetical protein.
  
 
 0.792
Gbem_2106
Flavin oxidoreductase, PfaD family, putative.
   
 
 0.788
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.