STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA19381.1S-adenosylhomocysteine hydrolase. (134 aa)    
Predicted Functional Partners:
OTA19380.1
Pyrophosphatase.
 
     0.952
OTA19379.1
Type I restriction-modification system, M subunit.
       0.819
OTA19378.1
Type I restriction-modification.
       0.784
OTA21141.1
LuxR family transcriptional regulator.
  
     0.572
OTA19377.1
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.492
OTA21530.1
CAAX protease.
  
     0.458
OTA19382.1
3-phenylpropionic acid transporter.
       0.423
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.