STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA16537.1Transcriptional regulator; Belongs to the peptidase S24 family. (234 aa)    
Predicted Functional Partners:
OTA18856.1
Hypothetical protein.
  
     0.706
OTA14512.1
Hypothetical protein.
  
    0.696
OTA14320.1
Phage tail tape measure protein.
   
    0.680
OTA19626.1
Putative helicase.
   
    0.671
OTA19204.1
O-antigen ligase.
  
     0.644
OTA21400.1
Porin.
  
     0.638
OTA20385.1
Translation initiation factor IF-2.
  
     0.610
OTA18699.1
RTX cytotoxin.
  
     0.609
OTA21154.1
Hypothetical protein.
  
     0.595
OTA19939.1
Hypothetical protein.
  
     0.587
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.