Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SACE_0145 | SACE_0148 | Two-component system sensor kinase. | Two-component system response regulator. | 0.863 |
SACE_0145 | SACE_1659 | Two-component system sensor kinase. | Two-component system sensor kinase. | 0.678 |
SACE_0145 | SACE_1705 | Two-component system sensor kinase. | Two component system sensor kinase. | 0.634 |
SACE_0145 | SACE_1918 | Two-component system sensor kinase. | Two-component system sensor kinase. | 0.698 |
SACE_0145 | SACE_3088 | Two-component system sensor kinase. | Two-component system sensor kinase. | 0.685 |
SACE_0145 | SACE_5230 | Two-component system sensor kinase. | Two-component system sensor kinase. | 0.740 |
SACE_0145 | SACE_7250 | Two-component system sensor kinase. | Hypothetical protein; Signal transduction histidine kinase. | 0.748 |
SACE_0148 | SACE_0145 | Two-component system response regulator. | Two-component system sensor kinase. | 0.863 |
SACE_0148 | SACE_1659 | Two-component system response regulator. | Two-component system sensor kinase. | 0.783 |
SACE_0148 | SACE_1705 | Two-component system response regulator. | Two component system sensor kinase. | 0.774 |
SACE_0148 | SACE_1918 | Two-component system response regulator. | Two-component system sensor kinase. | 0.803 |
SACE_0148 | SACE_3088 | Two-component system response regulator. | Two-component system sensor kinase. | 0.796 |
SACE_0148 | SACE_3310 | Two-component system response regulator. | Putative signal transduction histidine kinase. | 0.796 |
SACE_0148 | SACE_5230 | Two-component system response regulator. | Two-component system sensor kinase. | 0.794 |
SACE_0148 | SACE_6703 | Two-component system response regulator. | Two-component system sensor kinase. | 0.787 |
SACE_0148 | SACE_7250 | Two-component system response regulator. | Hypothetical protein; Signal transduction histidine kinase. | 0.781 |
SACE_0148 | SACE_7263 | Two-component system response regulator. | Two-component system sensor kinase. | 0.792 |
SACE_1659 | SACE_0145 | Two-component system sensor kinase. | Two-component system sensor kinase. | 0.678 |
SACE_1659 | SACE_0148 | Two-component system sensor kinase. | Two-component system response regulator. | 0.783 |
SACE_1659 | SACE_3310 | Two-component system sensor kinase. | Putative signal transduction histidine kinase. | 0.734 |
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