STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABR54457.1PFAM: protein of unknown function DUF375; KEGG: mmp:MMP1236 hypothetical protein; Belongs to the UPF0280 family. (247 aa)    
Predicted Functional Partners:
ABR54575.1
PFAM: CBS domain containing protein; protein of unknown function DUF39; KEGG: mmp:MMP1359 hypothetical protein.
 
   
 0.836
ABR54574.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mmp:MMP1358 ferredoxin.
 
   
 0.802
ABR54819.1
Protein of unknown function DUF39; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF39; KEGG: mmp:MMP1603 ferredoxin.
 
   
 0.782
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
    0.781
ABR54458.1
KEGG: mmp:MMP1237 hypothetical protein.
  
    0.703
ABR54456.1
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mmp:MMP1235 molybdopterin biosynthesis MoaE.
       0.666
ABR54455.1
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: mmp:MMP1234 hypothetical protein.
       0.655
ABR54460.1
KEGG: mmp:MMP1239 hypothetical protein.
  
    0.633
ABR54461.1
Sep-tRNA; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.
     
 0.609
ABR54462.1
KEGG: mmp:MMP1241 hypothetical protein.
       0.524
Your Current Organism:
Methanococcus vannielii
NCBI taxonomy Id: 406327
Other names: M. vannielii SB, Methanococcus vannielii SB, Methanococcus vannielii str. SB, Methanococcus vannielii strain SB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.