STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (289 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
 
 0.995
ABR55342.1
TIGRFAM: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative; KEGG: mmp:MMP0575 Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit C.
  
  
 0.995
rps17e
KEGG: mmp:MMP0577 30S ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family.
  
    0.995
ABR55345.1
PFAM: Chorismate mutase; KEGG: mmp:MMP0578 chorismate mutase.
  
  
 0.993
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.985
ABR54907.1
PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: mmp:MMP1702 homoserine dehydrogenase.
 
 
 0.967
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 0.954
rps15
PFAM: ribosomal protein S15; Ribosomal S13S15-like; KEGG: mmp:MMP1579 probable SSU ribosomal protein S15P/S13E.
  
  
 0.863
ABR54317.1
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cps:CPS_2875 Orn/DAP/Arg decarboxylase, family 2.
 
  
 0.846
thyA
Thymidylate synthase; May catalyze the biosynthesis of dTMP using an unknown cosubstrate; Belongs to the thymidylate synthase family. Archaeal-type ThyA subfamily.
  
  
 0.845
Your Current Organism:
Methanococcus vannielii
NCBI taxonomy Id: 406327
Other names: M. vannielii SB, Methanococcus vannielii SB, Methanococcus vannielii str. SB, Methanococcus vannielii strain SB
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