STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsBD-ribose transport protein (ABC superfamily, peri_bind). (296 aa)    
Predicted Functional Partners:
rbsC
High-affinity D-ribose transport protein (ABC superfamily, membrane); Belongs to the binding-protein-dependent transport system permease family.
 0.999
rbsA
High-affinity D-ribose transport protein (ABC superfamily, atp_bind); Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.996
rbsD
Membrane-associated component of high-affinity D-ribose transport system, membrane; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.982
XBJ1_3656
Sensor protein BarA.
 
 
 0.977
rcsC
Sensor histidine kinase RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
   
 
 0.968
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.915
rbsR
Transcriptional repressor for ribose metabolism (GalR/LacI family).
 
  
0.693
gshA
Gamma-glutamate-cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
   
  
 0.689
lsrF
Putative aldolase with ribulose-phoshate binding barrel; Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the transfer of an acetyl moiety from 3-hydroxy-5- phosphonooxypentane-2,4-dione to CoA to form glycerone phosphate and acetyl-CoA; Belongs to the DeoC/FbaB aldolase family.
  
  
 0.668
rssB
Response regulator involved in protein turnover, controls stability of RpoS.
   
 
 0.667
Your Current Organism:
Xenorhabdus bovienii
NCBI taxonomy Id: 406818
Other names: X. bovienii SS-2004, Xenorhabdus bovienii SS-2004, Xenorhabdus bovienii str. SS-2004, Xenorhabdus bovienii strain SS-2004
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.