STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XBJ1_2154ABC transport protein XpsD (Fragment) (modular protein). (551 aa)    
Predicted Functional Partners:
XBJ1_1966
Transposase (fragment); Gene remnant; enzyme.
 
  
 0.920
XBJ1_1968
Putative Ornithine racemase.
 
  
 0.917
XBJ1_2152
Peptide synthetase XpsB.
 
  
 0.893
XBJ1_0775
Putative Ornithine racemase.
 
  
 0.884
XBJ1_0774
Putative Phenylalanine racemase (ATP-hydrolyzing).
 
  
 0.873
XBJ1_1126
Putative non-ribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.871
XBJ1_0310
Putative non-ribosomal peptide synthetase.
 
  
 0.860
XBJ1_2691
Putative Nonribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.860
XBJ1_1967
Non-ribosomal peptide synthetase (fragment).
 
  
 0.812
XBJ1_2151
Peptide synthetase XpsB.
 
  
 0.809
Your Current Organism:
Xenorhabdus bovienii
NCBI taxonomy Id: 406818
Other names: X. bovienii SS-2004, Xenorhabdus bovienii SS-2004, Xenorhabdus bovienii str. SS-2004, Xenorhabdus bovienii strain SS-2004
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