STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK47938.1DNA-binding transcriptional regulator, LacI/PurR family. (338 aa)    
Predicted Functional Partners:
SDJ69557.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.861
SDK60374.1
PTS system, D-glucosamine-specific IIC component.
    
 0.800
SDJ98628.1
PTS system, beta-glucosides-specific IIC component.
   
 0.800
SDK47916.1
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
  
  0.783
SDJ87635.1
Alpha-amylase.
 
 
 0.612
SDK42913.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.569
SDK47865.1
Arabinogalactan oligomer / maltooligosaccharide transport system permease protein.
 
     0.551
SDK47821.1
Glycosidase.
 
 
 0.548
SDK05843.1
Phosphocarrier protein.
   
   0.521
SDK08155.1
Phosphocarrier protein.
   
   0.521
Your Current Organism:
Sediminibacillus albus
NCBI taxonomy Id: 407036
Other names: CGMCC 1.6502, DSM 19340, S. albus, Sediminibacillus albus Wang et al. 2009, Virgibacillus sp. NHBX5, strain NHBX5
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.