STRINGSTRING
Solyc00g007120.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g007120.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g007120.2.1annotation not available (750 aa)    
Predicted Functional Partners:
101253335
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; Has 166 Blast hits to 166 proteins i /.../pecies- Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source- NCBI BLink) (635 aa)
     
 
  0.840
101256200
Calcium-dependent protein kinase 6 (516 aa)
       
 
  0.808
101258032
annotation not available (437 aa)
     
 
  0.807
101256054
annotation not available (458 aa)
           
  0.801
101256817
annotation not available (199 aa)
           
  0.801
Solyc04g018110.1.1
Hop-interacting protein THI026 (242 aa)
           
  0.801
Solyc07g045380.2.1
Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein (568 aa)
     
 
  0.771
101250125
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1701 aa)
     
 
  0.771
101259158
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1706 aa)
     
 
  0.771
101259922
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1702 aa)
     
 
  0.771
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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