STRINGSTRING
Solyc00g011890.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g011890.2.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g011890.2.1Annotation not available (1036 aa)    
Predicted Functional Partners:
cdc2A-1
Cyclin-dependent protein kinase p34cdc2 (294 aa)
       
 
  0.977
Solyc11g070140.1.1
Uncharacterized protein (294 aa)
       
 
  0.958
Solyc04g058070.2.1
Uncharacterized protein (617 aa)
   
 
  0.938
Solyc12g055930.1.1
Uncharacterized protein (348 aa)
   
 
  0.921
Solyc12g010540.1.1
Uncharacterized protein (432 aa)
   
 
  0.921
Solyc12g006410.1.1
Uncharacterized protein (399 aa)
   
 
  0.921
Solyc08g082440.2.1
Uncharacterized protein (351 aa)
   
 
  0.921
Solyc08g080570.2.1
Uncharacterized protein (351 aa)
   
 
  0.921
SQD1
UDP-sulfoquinovose synthase (480 aa)
   
 
  0.921
Solyc07g043550.2.1
Uncharacterized protein (302 aa)
   
 
  0.921
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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