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STRINGSTRING
Solyc00g021520.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g021520.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g021520.1.1annotation not available (569 aa)    
Predicted Functional Partners:
101249471
Uncharacterized protein; threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (673 aa)
   
   
  0.881
101254504
Uncharacterized protein; Translation initiation factor 2, small GTP-binding protein (1010 aa)
     
        0.866
Solyc01g080840.2.1
Protein translocase subunit SecA; Albino or Glassy Yellow 1; Belongs to the SecA family (1018 aa)
     
 
  0.862
Solyc00g090130.1.1
annotation not available (354 aa)
     
 
  0.862
101253367
Chloroplast At1g16080 protein (302 aa)
     
        0.853
101251249
GTP-binding family protein (645 aa)
     
   
  0.844
101244612
annotation not available (883 aa)
     
        0.733
Solyc00g026870.1.1
annotation not available (465 aa)
   
 
  0.723
101251215
Uncharacterized protein; Chloroplast signal recognition particle 54 kDa subunit (567 aa)
   
   
  0.715
101250811
Ribosomal protein L21 (212 aa)
     
 
  0.658
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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