STRINGSTRING
Solyc00g025530.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g025530.1.1" - annotation not available in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g025530.1.1annotation not available (260 aa)    
Predicted Functional Partners:
101264854
annotation not available (683 aa)
   
   
  0.703
Solyc04g051600.2.1
annotation not available (533 aa)
           
  0.693
101266846
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P); Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily (374 aa)
   
   
  0.644
101249838
DEA(D/H)-box RNA helicase family protein (754 aa)
           
  0.642
ARD
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (242 aa)
   
   
  0.641
Solyc09g082640.1.1
annotation not available (181 aa)
   
   
  0.641
101255136
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene) (189 aa)
   
   
  0.641
101249769
Uncharacterized protein; S-methyl-5-thioribose kinase (420 aa)
   
   
  0.619
Solyc00g126430.1.1
annotation not available (287 aa)
   
   
  0.612
101258016
annotation not available (239 aa)
         
  0.584
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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