STRINGSTRING
Solyc00g025540.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g025540.1.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g025540.1.1Annotation not available (379 aa)    
Predicted Functional Partners:
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
         
  0.635
Solyc04g016010.2.1
Uncharacterized protein (537 aa)
         
  0.635
Solyc03g119700.2.1
Uncharacterized protein (159 aa)
     
      0.600
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
         
  0.507
Solyc00g135050.1.1
Annotation not available (143 aa)
   
          0.489
Solyc03g063560.2.1
Uncharacterized protein (1621 aa)
         
  0.475
Solyc11g040390.1.1
Uncharacterized protein (819 aa)
         
  0.434
Solyc06g064550.2.1
Uncharacterized protein (919 aa)
         
  0.434
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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