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Solyc00g027770.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g027770.2.1" - Pectin methylesterase 31 in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g027770.2.1Pectin methylesterase 31 (317 aa)    
Predicted Functional Partners:
101257697
Pectin lyase-like superfamily protein (483 aa)
 
   
  0.815
Solyc11g008140.1.1
annotation not available (449 aa)
 
   
  0.809
101264933
annotation not available (494 aa)
 
   
  0.805
Solyc09g005850.2.1
annotation not available (326 aa)
 
   
  0.804
101267397
Pectin lyase-like superfamily protein (336 aa)
 
   
  0.803
Solyc02g067650.1.1
Uncharacterized protein; Polygalacturonase 3 (389 aa)
   
   
  0.779
TAPG4
Polygalacturonase 4 (387 aa)
   
   
  0.779
TAPG2
Abscission polygalacturonase; Polygalacturonase 2 (392 aa)
   
   
  0.779
101260021
Polygalacturonase 7 (397 aa)
   
   
  0.778
LOC544004
Polygalacturonase 1 (392 aa)
   
   
  0.777
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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